4. Comparative Genomic Analysis of Gene Regulation

5. Library Complexity and Short Read Alignment (Mapping)

7. ChIP-seq Analysis; DNA-protein Interactions

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10. Markov and Hidden Markov Models of Genomic and Protein Features

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11. RNA Secondary Structure; Biological Functions and Predictions

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6. Genome Assembly

3. Global Alignment of Protein Sequences (NW, SW, PAM, BLOSUM)

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8. RNA-sequence Analysis: Expression, Isoforms

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20. Human Genetics, SNPs, and Genome Wide Associate Studies

15. Gene Regulatory Networks

19. Discovering Quantitative Trait Loci (QTLs)

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18. Analysis of Chromatin Structure